BigTree:
I am certainly not treating theory as a hypothesis, fucking or otherwise. There is a considerable difference between the two, as everyone knows. A theory would certainly have a considerably greater amount of proof than a mere hypothesis, which is still waiting to be demonstrated convincingly.
Evolution is a theory, not a hypothesis, and there is nothing denigrating to science in noting that it is a theory. I have no quibble with science, and I have the greatest respect for it. But I try not to have any illusions about it.
The concept that scientists don't understand the history of their own branch of science is based on Thomas Kuhn, The Structure of Scientific Revolutions, and his followers.
The idea that the history of science is subversive to "doing" science comes from an article in the Chronicle of Higher Education - IIRC - from way back. The article was meant to be provocative, and I suppose I was being a little as well. The point was that scientists needed to believe that their theory - their overall understanding of their field and its various explanations of phenomena - was proven fact in order to do ordinary scientific research, which for the most part consists of experiments to elaborate the original theory and to help provide further proof that it is correct. At the same time the history of science appears to show us that often what is assumed to be proven fact is - in fact - a theory, and that when enough unsolvable problems arise in an accepted paradigm, then the bolder members of the scientific community will begin the search for a new paradigm, which may eventually replace the old paradigm.
In any event, I think the scientists should stick to doing their scientific research and perfecting their existing theories within the currently accepted paradigm. They are very good at that. Too sophisticated an understanding of their own history might get in their way. On the other hand, the historians of science are better at understanding the history of science than the scientists themselves. There is nothing chiseled in stone that says that the two have to agree. If we wish, however, to understand science as a whole, then we also need to give due consideration to the views not just of scientists but also the historians of science.